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Working Group

Bioinformatics Pipelines and Visualization

Advancing reproducible, interoperable bioinformatics workflows for public health genomics.

Join Working Group

The PHA4GE Bioinformatics Pipelines and Data Visualization Working Group focuses on improving the standardization, portability, and reproducibility of public health bioinformatic workflows. We develop best practices, recommendations, and reference approaches for pipeline development, workflow management, software sustainability, and visualization, so genomic results can be reliably generated and clearly communicated across diverse environments and resource settings.

What you’ll work on

This Working Group brings together bioinformaticians, software developers, and public health practitioners to align on practical approaches for building and running genomic analysis pipelines.

Key focus areas include:

  • Public health bioinformatic software and reusable components

  • Workflow management and templating, including validation and benchmarking

  • File input/output specifications and parameterization

  • Pipeline packaging and containerization for portability across environments

  • APIs and interoperability between pipelines, platforms, and downstream tools

  • Visualization and reporting tools that support public health decision-making

  • UX and UI conventions for usable, accessible software

  • Publication and reporting standards for genomic analyses

Current and planned deliverables include:

  • Workflow recommendations for key public health use cases (e.g. pathogen assembly, lineage typing, variant screening, phylogenetic analysis)

  • A consensus white paper on code development, documentation standards, and best practices for open-source public health bioinformatics

  • Guidance and reference approaches for scalable, modular pipeline development, including cloud-native and hybrid environments

  • Recommendations for standardized data interchange (inputs, outputs, parameters) between modular pipelines and visualization tools

  • Guidance on software sustainability, including identification of missing or high-priority software components and services

Why join

If you build, maintain, deploy, or depend on bioinformatic pipelines for public health genomics, your experience can directly shape standards that improve reliability and reuse across the ecosystem.

By joining, you can:

  • Help define best practices for reproducible public health bioinformatics

  • Influence how pipelines, tools, and visualizations interoperate

  • Collaborate with an international community working on real-world surveillance and outbreak response needs

  • Contribute to guidance that supports sustainable open-source software

Join Working Group

Overview

Inception: April 2020

# of Members: 330+

Chairs

Gültekin Ünal

Ankara University

Emily Smith

Center for Infectious Disease Research and Policy (CIDRAP)

Contact: [email protected]

Emeritus:
Jamie Southgate
Kevin Libuit
Victoria Dyster

Projects

View Next Meeting
See Our GitHub

Resources

Influenza Guidance Document

The Influenza Guidance Document provides a comprehensive public health resource for standardized influenza genomic analysis and surveillance. Covering viral genome structure, seasonal and pandemic influenza, zoonotic transmission, drug resistance, and antigenic drift and shift, this guide integrates bioinformatics workflows with practical tools and open-access platforms such as INSaFLU, IRMA, Nextstrain, BV-BRC, and FluSurver. Designed for both beginners and experienced bioinformaticians, the document supports global genomic surveillance, vaccine strain selection, outbreak investigation, and pandemic preparedness across human and animal health sectors.

HIV Bioinformatics Solutions Document

HIV Bioinformatics Solutions is a practical guidance resource that helps bioinformaticians navigate HIV genomics for public health and research applications. Covering HIV genome structure, evolution, and subtypes, it outlines clear analysis pathways for genomic characterization and subtyping, drug resistance surveillance, resistance prediction and drug development, and genomic epidemiology. The document pairs real-world case studies with recommended sequencing strategies, curated tool lists, and key reference databases (including Stanford HIVdb and Los Alamos), supporting more standardized, reproducible, and accessible HIV bioinformatics workflows worldwide.

Proposed Standards for Public Health Bioinformatics Software

PHA4GE has developed software development standards to address gaps in reproducibility, interoperability, and sustainability in public health bioinformatics. These guidelines support best practice in the design, testing, and long-term maintenance of bioinformatics software for pathogen genomics.

Bioinformatics Solutions for Mpox Genomic Analysis

PHA4GE provides a community-driven, living guidance document for MPXV genomic analysis, identifying key challenges and open-source bioinformatics tools for public health use. The resource supports ongoing collaboration and updates as methods and tools evolve.

Identifying SARS-CoV-2 Recombinants

PHA4GE provides guidance on identifying and characterising recombinant SARS-CoV-2 genomes, addressing challenges in lineage assignment and breakpoint detection. The document highlights accessible bioinformatics resources to support consistent and systematic recombination surveillance.

Bioinformatics Solutions for SARS-CoV-2 Genomic Analysis

PHA4GE provides a community-driven, living guide to SARS-CoV-2 genomic analysis, identifying common bioinformatics challenges and open-source resources for public health use. The document supports ongoing collaboration and continuous improvement.

Omicron (B.1.1.529; 21K) Variant Resources​

PHA4GE provides a resource-focused guide to support genomic analysis of the SARS-CoV-2 Omicron variant, addressing challenges posed by its mutation profile. The document highlights open-access bioinformatics tools to support public health surveillance and research.

Quality Control Solutions for SARS-CoV-2 Genomic Analysis

PHA4GE provides QC guidance for SARS-CoV-2 genomic sequencing, addressing common sources of variability and data quality issues in NGS workflows. The document highlights practical bioinformatics approaches to support reliable genomic surveillance.

Members

David Aanensen | University of Oxford. Wellcome Sanger Institute | United Kingdom

Tahseen Abbas | Private industry | India

Humble Abel | Institute of Human Virology | Nigeria

Rejoice Helma Abimiku | Institute of Human Virology, Nigeria | Nigeria

Daniel Adediran | Helix Biogen Institute | Nigeria

Bethlehem Adnew | Armauer Hansen Research Institute | Ethiopia

Ayorinde Afolayan | University of Freiburg Medical Centre | Germany

Maryam Ahmadi Jeshvaghane | Research Programmer II | United States

Boaz Aine | Makerere University | Uganda

Charity Wiafe Akenten | Kumasi Center for Collaborative Research in Tropical Medicine | Ghana

Oluwatosin Akinwotu | University Of Ibadan | Nigeria

Daniel Akinyemi | Federal University of Technology, Akure | Nigeria

Mohammad Khurshed Alam Khan | Aligarh Muslim University | India

Dicko Amadou | Reference Central Laboratory | Mali

Frank Ambrosio | Theiagen Genomics | United States

Justice Ohene Amofa | Noguchi Memorial Institute for Medical Research | Ghana

Abel Anzaku | Global Health and Infectious Diseases Control Institute | Nigeria

Jaisy Arikkatt | Public Health Virology, Queensland Health | Australia

Emilia Arjona | Instituto de Salud Carlos III (ISCIII) | Spain

Musana Habimana Arsene | King Faisal Hospital/ Malaria Research Laboratory | Afghanistan

Philip Ashton | University of Liverpool | United Kingdom

Carmen Avitia | APHL – CDC Genomic Data Intern at New Mexico Department of Health | United States

Oluwasegun Babaleye | Nigerian Institute of Medical Research | Nigeria

Dhatri Badri | University of Michigan | United States

Moneeb Irshad Bajwa | DPHL | United States

Kate Baker | University of Liverpool | United Kingdom

Yiming Bao | China National Center for Bioinformation | China

Julio Barrios | LCSP-MSPBS | Paraguay

Irene Bassano | UKHSA and Imperial College London | United Kingdom

Sion Bayliss | University of Bristol | United Kingdom

Trevor Bedford | University of Washington | United States

Hiba Ben Aribi | National Institute of Applied Sciences and Technology | Tunisia

Emmanuel Benjamin | University of Jos | Nigeria

Bhagyashree Besra | All India Institute of Medical Sciences, New Delhi | India

Pankaj Bhatt | Michigan State University | United States

Allison Black | Department of Epidemiology, School of Public Health, University of Washington Bedford Lab, Fred Hutchinson Cancer Research Center | United States

William Boateng | Noguchi Memorial Institute for Medical Research | Ghana

Daniel Bridges | National Malaria Elimination Centre, Lusaka, Zambia; Malaria Control & Elimination Partnership for Africa | Zambia

Kwame Buabeng | Noguchi Memorial Institute for Medical Research | Ghana

Dorota Julia Buczek | Medical Biology Department | Norway

Matthew Byott | University College London Hospital NHS, University College London | United Kingdom

William Calero-Cáceres | Universidad Técnica de Ambato | Ecuador

Jason Caravas | Centers for Disease Control and Prevention | United States

Leonardo Cardia Caserta | Animal Health Diagnostic Center – Cornell University | United States

Heather Carleton | CDC | United States

Andrés Carrazco Montalvo | National Reference Center for Genomics, Sequencing and Bioinformatics. National Institute for Research in Public Health Research | Ecuador

João Andre Carriço | University of Lisbon | Portugal

Daniel Carter | Government Agency | United Kingdom

Wasswa Charles Lwanga | University | Uganda

Julie Chih-Yu Chen | National Microbiology Laboratory Branch, Public Health | Canada

Samantha Chill | Ohio Department of Health | United States

Wonderful Choga | Botswana-Harvard AIDS Institute Partnership | Botswana

Uchenna Chukwu | University Of Ibadan | Nigeria

Rachel Colquhoun | University of Edinburgh | United Kingdom

Thomas Connor | Cardiff University | United Kingdom

Isabel Cuesta | Institute of Health Carlos III | Spain

Joep De Ligt | Institute of Environmental Science and Research Limited (ESR) | New Zealand

María De Toro | Research institute | Spain

Ege Dedeoğlu | World Health Organization | Turkey

Amadou Diallo | Institut Pasteur Dakar | Senegal

Delaney Ding | University of Florida | United States

Celeste Donato | University of Melbourne | Australia

Emma Doughty | Theiagen Genomics | United Kingdom

Victoria Dyster | Mitra Bio | United Kingdom

Lyndia Effendy | Universitas Airlangga | Indonesia

Nouhaila En Najih | National School Of Applied Sciences, Abdelmalek Essaadi University | Morocco

Dachel Aymard Eyenet Boussam | National Public Health Laboratory |

Katherine Figueroa | Wellcome Sanger Institute | United Kingdom

Fatima Fleitas | Laboratorio Central de Salud Pública | Paraguay

Carlos Flores Infante | ITB institute | Spain

Mykyta Forofontov | Instituto de Medicina Molecular João Lobo Antunes | Portugal

Christhian Ulises Franco Frias | SENASICA | Mexico

Ivon Fredrick | Research institute |

James Opoku Frimpong | Kwame Nkrumah University of Science and Technology, KNUST, Ghana | Ghana

Amy Gaskins | University of Liverpool | United Kingdom

Thibaut Armel Chérif Gnimadi | Centre de recherche et de formation en infectiologie de Guinée (CERFIG) | Guinea

Etienne Gnimpieba | University of South Dakota | United States

Alexander Gogoladze | NCDC | Georgia

Fatma Guerfali | Research Institute (Institut Pasteur de Tunis) | Tunisia

Jennifer Guthrie | Public Health Ontario | Canada

Nihal Habib | Laboratory of Precision Medicine and One Health (MedPreOne), Faculty of Medicine, Mohammed VI University of Sciences and Health, Casablanca, Morocco | Morocco

Simatsidk Haregu | University of Alberta, Edmonton, AB, Canada | Canada

Simon Harris | Bill and Melinda Gates Foundation | United Kingdom

Ndugwa Henry | Pwani University | Uganda

Cindy Fabiola Hernández Pérez | National Service of Health, Safety and Agrifood Quality | Mexico

Emma Hodcroft | Institute for Social and Preventive Medicine at the University of Bern | Switzerland

Ryan Hollingshead | Delaware Division of Public Health | United States

Jennifer Holmes | Ohio Department of Health, CDC Foundation | United States

Martin Hölzer | Robert Koch Institute, Genome Competence Center | Germany

Bin Hu | LANL | United States

Clement Igiraneza | University Teaching Hospital of Butare | Rwanda

Adish Illikkal | AI & Robotics Technology Park, Indian Institute of Sciences | India

Zamin Iqbal | EMBL-European Bioinformatics Institute | United Kingdom

Dr. Sara Janiad | The Women University, Multan | Pakistan

Mary Jewell | State Department of Public Health | United States

Praissy Zefi Jeyakumar | Technical University of Denmark | Denmark

William Johnson | New Mexico Department of Health/APHL | United States

Olupot Joseph | Infectious Disease Institute, Makerere University | Uganda

John Juma | ILRI CGIAR | Kenya

Toheeb Jumah | Mohammed VI Polytechnic University | Morocco

Danstan Kabuuka | Uganda Virus Research Institute | Uganda

Katrina Kalantar | Chan Zuckerberg Initiative | United States

Keshav Kant | Ashoka University | India

Samiah Kanwar | The Aga Khan University Hospital | Pakistan

Stephen Kanyerezi | The Central Public Health Laboratories | Uganda

Curtis Kapsak | Theiagen | United States

Zainab Kashim-Bello | Stellenbosch University | South Africa

Masood Ur Rehman Kayani | National University of Sciences & Technology (NUST) | Pakistan

Mo Kaze | University of California, Merced | United States

Aqsa Khalid | University of Wisconsin Madison | Pakistan

Ghulam Khan | SANBI | United Kingdom

Tahsin Khan | ICDDR,B | Bangladesh

Waqasuddin Khan | Aga Khan University Medical College, karachi, Pakistan | Pakistan

Aybek Khodiev | CDC | Uzbekistan

Brian Kimutai | WRAIR | Kenya

Leonard Kingwara | National Public Health Laboratory | Kenya

Gloria Kirabo | Makerere University | Uganda

Mark Tefero Kivumbi | Pwani University, Kilifi, Kenya | Uganda

Dan Knight | PathWest Laboratory Medicine | Australia

Peace Kobusingye | Makerere University | Uganda

Enock Kofi Amoako | WACCBIP, University of Ghana | Ghana

Mazo Kone | University Of Ibadan | Nigeria

Seeraja Konnur | AI & Robotics Technology Park, Indian Institute of Sciences | India

Davis Kuchaka | Kilimanjaro clinical research institute | Tanzania

Benard Kulohoma | | Kenya

Dinesh Kumar | Hellenic Pasteur Institute | Greece

Dinesh Kumar | Gujarat University, Ahmedabad | India

Bruhan Kyomuhendo | university of Pretoria | South Africa

Andrew Lang | Massachusetts Department of Public Health | United States

Brad Langhorst | NEB | United States

Terence Lee | PathWest Laboratory Medicine | Australia

Darrin Lemmer | Translational Genomics Research Institute (TGen) | United States

Lex Leong | SA Pathology | Australia

Joshua Levy | Scripps Research | United States

Kevin Libuit | Bioinformatics SME, Libuit Scientific, James Madison University | United States

Sam Lipworth | University of Oxford | United Kingdom

Robert Literman | United States Food and Drug Administration | United States

Stephanie Lo | Wellcome Sanger Institute | United Kingdom

Phoenix Logan | Chan Zuckerberg Initiative | United States

Emmanuel Lokilo | Research institute | Congo, The Democratic Republic of the

Nicholas Loman | University of Birmingham | United Kingdom

Jose Lorenzo | universidad de la laguna | Spain

Tshikala Eddie Lulamba | University of the Western Cape, South African Bioinformatics Institute | South Africa

Stephanie Lunn | Washington State Department of Health | United States

Duncan Maccannell | CDC | United States

Guerrino Macori | University College Dublin | Ireland

Wolfgang Maier | Galaxy Europe, University of Freiburg | Germany

Brenda Makena-Mugambi | University of Nairobi | Kenya

Tsireledzo Goodwill Makwarela | Tshwane University of technology | South Africa

Emery Manirambona | Department of Biomedical and Medical Sciences, Oxford Brookes University | United Kingdom

Lawrence Mapunda | Tanzania National Public Health Laboratory | Tanzania

Unarine Matodzi | university of Pretoria | South Africa

Perceval Maturure | UCT | South Africa

Christabel Mbachu | University Of Ibadan | Nigeria

Valeri Mbi | R4DHP | Cameroon

Pricilla Mbiri | University of Namibia | Namibia

Gerald Mboowa | Infectious Diseases Institute, Makerere University | Uganda

Conor Meehan | Nottingham Trent University | United Kingdom

Zelalem Mekuria | Ohio State University | United States

Orson Mestanza | Instituto Nacional de Salud | Peru

Rito Mikhari | National Institute for Communicable Diseases | South Africa

Nelisiwe Mkize | Stellenbosch University | South Africa

Queenie Mondile | Research Unit in Bioinformatics, Rhodes University | South Africa

Pieter Monsieurs | Institute of Tropical Medicine | Belgium

Sara Monzón | Institute of Health Carlos III | Spain

Koketso Morapedi | University of Botswana | Botswana

Tshepang Motlhoki | South African Research Council | South Africa

Joana Mourão | Technical University of Denmark, National Food Institute | Denmark

Evangelos Mourkas | University of Oxford | United Kingdom

Sikhulile Moyo | Botswana Harvard AIDS Institute Partnership | Botswana

Milka Mputhia | Pwani University | Kenya

Nosihle Msomi | National Institute for Communicable Diseases | South Africa

Zeenatuddeen Muhammad | Environmental Health Council/Institute of Nigeria | Nigeria

Nicola Mulder | UCT | South Africa

Tirmizhi Munkaila | Universiti Teknologi Malaysia | Nigeria

Kathryn Murie | University of California, San Francisco | United States

Sebastian Musundi | KEMRI | Wellcome Trust Research Program | Kenya

Eric Muthanje | KEMRI | Kenya

Awelani Mutshembele | South African Medical Research Council | South Africa

Rehema Mukami Mwaniki | Research Unit in Bioinformatics – Rhodes University | South Africa

Jovita Nagawa | ACE, Makerere University Uganda | Uganda

Gloria Nakabiri | African Center of Excellence in Bioinformatics and Data Intensive Sciences | Uganda

Sharvari Narendra | University of Virginia | United States

Mamadou Ndao | Institute For Health Research, Epidemiological Surveillance And Training (IRESSEF) | Senegal

Christian Ndekezi | Makerere University | Uganda

Caivil Ndobela | South African Medical Research Council | South Africa

Richard Neher | University of Basel | Germany

Anton Nekrutenko | galaxyproject.org | United States

Martha Nelson | NIH | United States

Mxolisi Nene | Agricultural Research Council | Afghanistan

Elizabeth Neuhaus | CDC | United States

Aitana Neves | SIB Swiss Institute of Bioinformatics | Switzerland

Sylvester Newton | Kumasi Center for Collaborative Research in Tropical Medicine | Ghana

Serigne Fallou Mbacké Ngom | Institut Pasteur de Dakar | Senegal

Bassirou Ngom | International Center for Research and Training in Applied Genomics and Health Surveillance (CIGASS) | Senegal

Justice Tresor Ngom Ngom | Division of Molecular Biology and Human Genetics, Faculty of medicine and health Science, Stellenbosch University | South Africa

Julien Alban Nguinkal | Bernard-Nocht Institute for Tropical Medecine, Department of Infectious disease Epidemiology | Germany

Marc Niebel | BHSCT Regional Virology Laboratory | United Kingdom

Imran Nisar | Aga Khan University Medical College, karachi, Pakistan | Pakistan

Jimmy Nkaiwuatei | Zihi Institute | Kenya

Ugboaja Nkechi Blessing | Institute of Human Virology | Nigeria

Ninah Nnamirembe | Uganda Virus Research Institute | Uganda

Simeon Nthuku | Sorbonne University | France

Buhle Ntozini | SANBI | South Africa

Colman O’cathail | EMBL-EBI, European Nucleotide Archive | United Kingdom

Martin Odong | Makerere University | Uganda

Henry Odyek | Makerere University | Uganda

Abiodun Ojo | Ekiti State Teaching Service Commission | Nigeria

Benson Okello | Central Public Health Laboratories – Uganda | Uganda

David Oladejo | Covenant University | Nigeria

David Oladejo | Covenant Applied Informatics and Communication Africa Center of Excellence | Nigeria

Jacques Olivier | University College Dublin | Ireland

Rogers Ronnic Omara | Makerere University | Uganda

Edidah Ongera | Kemri-Wellcome Trust Research Programme | Kenya

James Osei-Mensa | Kumasi Centre for Collaborative Research into Tropical Medicine | Ghana

Alice Owiti | University of Nairobi (CEBIB) | Kenya

Sumir Panji | UCT | South Africa

Wangun Parfait Pascal | Centre Pasteur du Cameroun | Cameroon

Daniel Park | Broad Institute | United States

Matt Parker | Opendream | Thailand

David Pattie | Georgia Tech Research Institute | United States

Sreeram Peela | JIPMER, India | India

Robert Petit | Wyoming Public Health Laboratory | United States

Aaron Petkau | Public Health Agency of Canada | Canada

Marcelo Pillonetto | Universidade Católica do Paraná (PUCPR) | Brazil

Mpala Pilula | Copperbelt University | Zambia

Dylan Pilz | Scripps Research | United States

Michelle Plaatjes | PHA4GE | South Africa

Natapol Pornputtapong | Chulalongkorn University | Thailand

Arjun Prasad | National Center for Biotechnology Information | United States

Nadim Rahman | EMBL-EBI | United Kingdom

Sakshaleni Rajendiran | Institute for Medical Research, National Institute of Health | Malaysia

Jeff Ram | Wayne State University | United States

Rabelani Ramahala | Rhodes university | South Africa

Vincent Rennie | UAntwerp | Belgium

Sara Rey | Public Health Wales | United Kingdom

Lindsey Rickerman | State government | United States

Joan Rokani Bayowa | Makerere University | Uganda

Assaf Rokney | Ministry of Health, Israel | Israel

Filipe Romero Rebello Moreira | Federal University of Rio de Janeiro | Brazil

Kiiza Ronald | MRC/UVRI and LSHTM and Makerere university | Uganda

Jeevan Reddy Saddikuti | State government | United States

Berhanu Yitayew Sahilu | Armauar Hansen Research Institute | Ethiopia

Babatunde Akeem Saka | Centre for Biomedical Research Initiatives | Nigeria

Iqra Saleh | Aga Khan University Medical College | Pakistan

Emmanuel James San | Kwazulu-Natal Research and Innovation Sequencing Platform (KRISP) | South Africa

Mark Schultz | Deakin University | Australia

Mark Schultz | University of Melbourne | Australia

Matthew Scotch | Arizona State University | United States

Michelle Scribner | Theiagen Genomics | United States

Torsten Seemann | University of Melbourne | Australia

Syrus Semawule | Makerere University | Uganda

Torsten Semmler | Robert Koch Institute, NG 1 – Microbial Genomics | Germany

Dejenie Shiferaw | Ethiopian Public Health Institute | Ethiopia

Akbar Shoukat | Aga Khan University Hospital | Pakistan

Rajeev Shrestha | Kathmandu University Hospital | Nepal

Ana Shubitidze | Lugar Research Center | Georgia

Muhammad Shujaat | Shenzhen University | China

Nitin Shukla | Gujarat Biotechnology Research Centre | India

Emily Smith | Theiagen Genomics | United States

Keri Smith | APHL | United States

Jamie Southgate | PHA4GE | South Africa

Jennifer Spinler | Texas Children’s Hospital, Baylor College of Medicine | United States

Alfred Ssekagiri | Uganda Virus Research Institute | Uganda

Aloysious Ssemaganda | Uganda National Health Laboratories and Diagnostic | Uganda

Ivan Sserwadda | Makerere University | Uganda

Irina St. Louis | APHL/CDC | United States

Thomas Stark | Centers for Disease Control and Prevention | United States

Marc Stegger | Statens Serum Institut | Denmark

Mitchell Sullivan | Public and Environmental Health at Queensland Health | Australia

Suo Suo | bbi | Afghanistan

Nishat Tamanna | Biochemistry and Molecular Biology, University of Dhaka | Bangladesh

Kelvin Tanson | Ghana Institute of Management and Public Administration | Ghana

Setshaba Taukobong | National Institute for Communicable Diseases | South Africa

Hervé Raoul Tazokong | University of Yaoundé 1 | Cameroon

Tengku Zetty Maztura Tengku Jamaluddin | Universiti Putra Malaysia | Malaysia

Suchitra Thapa | Tribhuvan University Nepal | Nepal

Russell Thomas | Yale School of Public Health, SalivaDirect Inc. | United States

Isack Tibihika | Kilimanjaro clinical research institute | Tanzania

Marc-Deniel Tolentino | UC Riverside | United States

Christopher Tomkins-Tinch | Broad Institute of MIT and Harvard | United States

Godwin Tusabe | Central Public Health laboratories, Uganda | Uganda

Peace Uche | Noguchi Memorial Institute for Medical Research | Ghana

Gültekin Ünal | National Virology Reference laboratory of Turkey | Turkey

Marius Van Den Beek | The Pennsylvania State University | United States

Gary Van Domselaar | University of Manitoba | Canada

Peter Van Heusden | SANBI | South Africa

Annelies Van Rie | University of Antwerp | Belgium

Sarai Varona | Public Health Research Institute | Spain

Matthew Wade | Government Agency | United Kingdom

Jade Wang | University of California San Diego | United States

Bryan Wee | University of Edinburgh | United Kingdom

Catie Williams | University of Liverpool | United Kingdom

Sage Wright | Pennsylvania Department of Health | United States

Tewedaj Yadesa | District health system | Ethiopia

Gustavo Ybazeta | Health Sciences North Research Institute | Canada

Mukhlid Yousif | National Institute for Communicable Diseases | South Africa

Firas Zemzem | Higher institute of biotechnology of Monastir | Tunisia

Jacob Zidek | Arizona Department of Health | United States

Sara Zufan | NIH/USDA | United States

Ahmad Zyoud | EMBL-EBI | United Kingdom

Related Research

Phylodynamics offers new ways to look at pathogen evolution

Dr Zoe Dyson (LSHTM) introduced phylodynamics at the July Bioinformatics Pipelines & Visualization meeting, exploring pathogen evolution, resistance, and public health applications.

Selecting the method and data for building transmission networks: a Mycobacterium tuberculosis case study

We’re excited to announce Episode 14 of the Genomic Horizons Webinar Series, featuring a talk by Conor Meehan, PhD, FHEA, FRSB, Associate Professor of Microbial Bioinformatics at Nottingham Trent University.

Introduction to Public Health Phylogenetics 

We’re excited to announce Episode 13, featuring a talk by Dr. Zoe A. Dyson, Assistant Professor at LSHTM!