Working Group

Infrastructure

Enabling flexible, sustainable computing for public health genomics.

The PHA4GE Infrastructure Working Group focuses on enabling reliable, scalable, and secure computing infrastructure for public health genomics. We develop consensus architectures, best practices, and reference approaches that support bioinformatic workflows across cloud, on-premise, hybrid, and field-based environments including settings with limited or unreliable connectivity.

What you’ll work on

This Working Group brings together infrastructure engineers, bioinformaticians, IT teams, and public health practitioners to align on practical infrastructure solutions.

Key focus areas include:

  • Cloud computing and storage, including hybrid and multi-cloud approaches

  • On-premise high-performance computing (HPC) and local server environments

  • Field-portable systems for low-resource or disconnected settings

  • Containerization and orchestration (e.g. Docker, Singularity, Kubernetes)

  • Networking and connectivity models, including intermittent or low-bandwidth environments

  • Access control, monitoring, and security considerations

  • Implementation, sustainability, and support models

  • Workforce requirements and procurement strategies

Key deliverables include:

  • Best practices for scalable, provider-agnostic cloud workflows, including hybrid and multi-cloud environments

  • Recommendations and requirements for maintaining a core set of deployable containers and services

  • Guidance on containerization, orchestration, and management for public health bioinformatics

  • Infrastructure and staffing recommendations for routine genomic surveillance workflows

  • Reusable strategies for cost-efficient cloud deployment and resource management (e.g. elastic computing, serverless approaches)

Why join

If you support or design computing environments for public health genomics—whether in the cloud, on-premise, or in the field, your experience can help shape practical, adoptable infrastructure guidance.

By joining, you can:

  • Help define infrastructure best practices for diverse public health settings

  • Share lessons learned from real-world deployments

  • Collaborate with a global community tackling sustainability and scalability challenges

  • Contribute to guidance that supports equitable access to genomic technologies

Overview

Inception: April 2020

# of Members: 40+

Chairs

Peter van Heusden

SANBI

Daniel Park

Broad Institute

Projects

Resources

PHA4GE’s Infrastructure Working Group provides guidance and resources to address common challenges in designing and maintaining bioinformatics infrastructure for public health. These materials support standardisation, portability, and reproducibility of workflows across diverse institutional and resource settings.

Members

Nabil-Fareed Alikhan | Quadrum Institute | United Kingdom

Sheila Atogiba | Public Health Institute | Germany

Ammar Aziz | Victorian Infection Disease Reference Laboratory | Australia

Dhwani Batra | CDC | United States

Huanfa Chen | University College London | United Kingdom

Thomas Connor | Cardiff University | United Kingdom

Tim Dallman | World Health Organization – International Pathogen | Netherlands

Emma Doughty | Theiagen Genomics | United Kingdom

Pascal Felix | Intellectual Consortium, LLC | United States

Kelsey Florek | WI DPH | United States

Raluca Gatej | National Institute of Public Health | Romania

Nidhal Ghanmi | IPT | Tunisia

George Githinji | KEMRI | Kenya

Anders Gonçalves da Silva | Doherty Institute | Australia

Simon Harris | Bill and Melinda Gates Foundation | United Kingdom

William Hsiao | BC CDC | Canada

Bin Hu | LANL | United States

David Jones | Centers for Disease Control and Prevention | United States

Ghedira Kais | Institut Pasteur de Tunis | Tunisia

Soyean Kim | Providence Health care | Canada

Karin Lagesen | Norwegian Veterinary Institute | Norway

Thanh Le-Viet | Quadram Institute Bioscience | United Kingdom

Cebile Lekhuleni | National Institute for Communicable Diseases | South Africa

Joshua Levy | Scripps Research | United States

Edward Lukyamuzi | Uganda Virus Research Institute | Uganda

Duncan MacCannell | CDC | United States

Suresh Maloney | UCT | South Africa

Amanda Mbalo | SANBI-UWC | South Africa

Abebe Aseffa Negeri | Ethiopian Public Health Institute (EPHI) | Ethiopia

Kim Ng | Statens Serum Institute | Denmark

Alfred Ngwa | MRC The Gambia | Gambia

James Otieno | Theiagen | United States

Daniel Park | Broad Institute | United States

Justin Payne | US FDA / GenomeTrakr | United States

Joseph Russell | MRI Global | United States

Torsten Semmler | Robert Koch Institute | Germany

Joel Sevinsky | MA DPH/Theiagen | United States

Anthony Underwood | Sanger | United Kingdom

Peter van Heusden | SANBI | South Africa

Belhadj Wahbi | Pasteur Institution Of Tunisia | Tunisia

David Yuan | EMBL-EBI | United Kingdom

Ahmad Zyoud | EMBL-EBI | United Kingdom

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